ID | Title | Section/Topic | Authors | Keywords |
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736 | A complete chloroplast sequences from Carex siderosticta Hance (Cyperaceae): one of the largest chloroplast genome in angiosperms Log in to add this item to your schedule | Phylogenomics | Jung, Jongduk; Kim, Kyung Hee; Yang, Tae-Jin; Park, Jongsun; Kim, Sangtae. | Carex siderosticta Cyperaceae Chloroplast genome Illumina IR |
628 | Anchored Phylogenomics in Angiosperms: Maximizing Data Combinability Through Coordinated Locus Selection Log in to add this item to your schedule | Phylogenomics | MAST , AUSTIN R; Lemmon, Alan; Buddenhagen, Chris; Lemmon, Emily. | angiosperms Anchored Phylogenomics Sequence Capture target enrichment phylogenomics |
811 | A Research Workflow for Development of Single-Copy Nuclear Loci and High-throughput Targeted Enrichment for Two or More Phylogenetic Studies Log in to add this item to your schedule | Phylogenomics | Jordon-Thaden, Ingrid; Uribe-Convers, Simon; Godden, Grant T.; Chamala, Srikar; Tank, David C.; MARTINE , CHRISTOPHER T. | Fluidigm Single Copy Nuclear Solanum Draba Data mining phylogenomics transcriptomics marker discovery next generation sequencing |
721 | A targeted subgenomic approach for phylogenomics based on microfluidic PCR and high throughput sequencing Log in to add this item to your schedule | Phylogenomics | Uribe-Convers, Simon; Settles, Matt L.; Tank, David C.. | Microfluidic Amplification Fluidigm PPR genes COSII nuclear low or single copy genes microfluidic PCR |
606 | Constructing phylogenetic datasets from bait-capture data without a genome: strategies and challenges Log in to add this item to your schedule | Phylogenomics | Johnson , Matthew G; Wickett, Norman; Devos, Nicolas; Liu, Yang; Medina, Rafael; Goffinet, Bernard; Shaw, Jonathan. | targeted sequence capture bioinformatics pipeline bryophtyes plastid data |
756 | Developing and evaluating novel nuclear markers for phylogenetic reconstruction in the myrrh genus, Commiphora Jacq. (Burseraceae) using multiplexed target enrichment Log in to add this item to your schedule | Phylogenomics | Coy , Kiera A; Weeks, Andrea; Gostel, Morgan. | |
544 | From Cacti to Carnivores: Using transcriptomics to explore the evolution of the highly diverse and globally distributed Caryophyllales Log in to add this item to your schedule | Phylogenomics | Brockington, Samuel F.; Yang, Ya; Moore, Michael J.; Smith, Stephen A.. | Caryophyllales phylogenomics Photosynthesis floral development Pigmentation drought tolerance transcriptomics |
569 | Inferring large phylogenies under the coalescent model using SNPs from next-generation sequence data Log in to add this item to your schedule | Phylogenomics | Blischak, Paul; Wolfe, Andrea; Kubatko, Laura. | Coalescent species tree quartet sampling next-generation sequencing simulation |
650 | Intragenomic polymorphisms among high-copy loci: A genus-wide study of nuclear ribosomal DNA in Asclepias (Apocynaceae) Log in to add this item to your schedule | Phylogenomics | Weitemier, Kevin; Straub, Shannon; Fishbein, Mark; Liston, Aaron. | concerted evolution genome skimming high-copy intragenomic polymorphism intra-individual site polymorphism (2ISP) nuclear ribosomal DNA (nrDNA) Asclepias |
556 | MarkerMiner 1.0: A New Pipeline and Tool for Phylogenetic Marker Development Using Angiosperm Transcriptomes Log in to add this item to your schedule | Phylogenomics | Chamala, Srikar; Godden, Grant T.; Garcia, Nicolas; Jordon-Thaden, Ingrid; Soltis, Douglas E.; SOLTIS, PAMELA S.. | single copy nuclear genes marker discovery transcriptomes phylogenomics next-generation sequencing angiosperms Bioinformatics |
752 | Phylogenetic Estimation in Chloridoid Grasses (Poaceae) using Hyb-Seq NGS Data Log in to add this item to your schedule | Phylogenomics | FISHER, Amanda; Bell , Hester; Ingram, Amanda L.; Hasenstab, Kristen; Columbus, J. Travis. | grass phylogeny next-generation sequencing polyploidy |
705 | Phylogenomics of the plant family Araceae Log in to add this item to your schedule | Phylogenomics | Henriquez , Claudia L; Arias, Tatiana; Pires, J. Chris; Croat, Thomas B.; Schaal, Barbara A.. | Araceae next generation sequencing clade Phylogeny |
673 | Phylogeny of Andropogoneae (Poaceae) and a new tool for automated assembly of plastomes Log in to add this item to your schedule | Phylogenomics | McKain, Michael; Hartsock, Ryan; Hodge, John; Layton, Daniel; Pasquet, Rémy; Vela, Dilys; Welker, Cassiano; Wilson, Mark; Zhong, Jinshun; Kellogg, Elizabeth. | Poaceae plastome Panicoideae Photosynthesis |
622 | Reconstructing gene family evolution in bryophytes: diversification, duplication, and horizontal transfer Log in to add this item to your schedule | Phylogenomics | Wickett, Norman; Johnson , Matthew G; Shaw, Jonathan; Goffinet, Bernard. | bryophytes genomics Transcriptome 1KP gene family evolution RNA Seq horizontal gene transfer whole genome duplication genome sequencing next generation sequencing |
553 | Target enrichment sequencing of the chloroplast genome of Neotropical Guatteria (Annonaceae) trees Log in to add this item to your schedule | Phylogenomics | Insupp, Bjorn; Erkens, Roy H.J.; Brandão, Rita D.. | Annonaceae next-generation sequencing target enrichment Guatteria |
593 | The Stratified Jackknife, a method for the analysis of phylogenetic support in multi-partition data matrices Log in to add this item to your schedule | Phylogenomics | DAVIS , JERROLD I; Barrett, Craig. | jackknife phylogenetics supermatrix support |
660 | Use of genome skimming to resolve phylogenies of recent radiations, a case of a Compositae in the paramo Log in to add this item to your schedule | Phylogenomics | Vargas , Oscar M; Simpson, Beryl. | Chloroplast genome Compositae Diplostephium genome skimming mitochondrial genome next generation sequencing Páramo phylogenetics phylogenomics rapid radiation ribosomal DNA |